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BinaryChromosome (Commons Math 3.2 API)
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org.apache.commons.math3.genetics</FONT>
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Class BinaryChromosome</H2>
<PRE>
<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
  <IMG SRC="../../../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">org.apache.commons.math3.genetics.Chromosome</A>
      <IMG SRC="../../../../../resources/inherit.gif" ALT="extended by "><A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">org.apache.commons.math3.genetics.AbstractListChromosome</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;
          <IMG SRC="../../../../../resources/inherit.gif" ALT="extended by "><B>org.apache.commons.math3.genetics.BinaryChromosome</B>
</PRE>
<DL>
<DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Comparable.html?is-external=true" title="class or interface in java.lang">Comparable</A>&lt;<A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</A>&gt;, <A HREF="../../../../../org/apache/commons/math3/genetics/Fitness.html" title="interface in org.apache.commons.math3.genetics">Fitness</A></DD>
</DL>
<HR>
<DL>
<DT><PRE>public abstract class <B>BinaryChromosome</B><DT>extends <A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;</DL>
</PRE>

<P>
Chromosome represented by a vector of 0s and 1s.
<P>

<P>
<DL>
<DT><B>Since:</B></DT>
  <DD>2.0</DD>
<DT><B>Version:</B></DT>
  <DD>$Id: BinaryChromosome.java 1416643 2012-12-03 19:37:14Z tn $</DD>
</DL>
<HR>

<P>

<!-- ======== CONSTRUCTOR SUMMARY ======== -->

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<B>Constructor Summary</B></FONT></TH>
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<TD><CODE><B><A HREF="../../../../../org/apache/commons/math3/genetics/BinaryChromosome.html#BinaryChromosome(java.lang.Integer[])">BinaryChromosome</A></B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>[]&nbsp;representation)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Constructor.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><CODE><B><A HREF="../../../../../org/apache/commons/math3/genetics/BinaryChromosome.html#BinaryChromosome(java.util.List)">BinaryChromosome</A></B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;&nbsp;representation)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Constructor.</TD>
</TR>
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<!-- ========== METHOD SUMMARY =========== -->

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<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>protected &nbsp;void</CODE></FONT></TD>
<TD><CODE><B><A HREF="../../../../../org/apache/commons/math3/genetics/BinaryChromosome.html#checkValidity(java.util.List)">checkValidity</A></B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;&nbsp;chromosomeRepresentation)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Asserts that <code>representation</code> can represent a valid chromosome.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>protected &nbsp;boolean</CODE></FONT></TD>
<TD><CODE><B><A HREF="../../../../../org/apache/commons/math3/genetics/BinaryChromosome.html#isSame(org.apache.commons.math3.genetics.Chromosome)">isSame</A></B>(<A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</A>&nbsp;another)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns <code>true</code> iff <code>another</code> has the same representation and therefore the same fitness.</TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
<CODE>static&nbsp;<A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;</CODE></FONT></TD>
<TD><CODE><B><A HREF="../../../../../org/apache/commons/math3/genetics/BinaryChromosome.html#randomBinaryRepresentation(int)">randomBinaryRepresentation</A></B>(int&nbsp;length)</CODE>

<BR>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Returns a representation of a random binary array of length <code>length</code>.</TD>
</TR>
</TABLE>
&nbsp;<A NAME="methods_inherited_from_class_org.apache.commons.math3.genetics.AbstractListChromosome"><!-- --></A>
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
<TH ALIGN="left"><B>Methods inherited from class org.apache.commons.math3.genetics.<A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</A></B></TH>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html#getLength()">getLength</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html#getRepresentation()">getRepresentation</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html#newFixedLengthChromosome(java.util.List)">newFixedLengthChromosome</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html#toString()">toString</A></CODE></TD>
</TR>
</TABLE>
&nbsp;<A NAME="methods_inherited_from_class_org.apache.commons.math3.genetics.Chromosome"><!-- --></A>
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
<TH ALIGN="left"><B>Methods inherited from class org.apache.commons.math3.genetics.<A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</A></B></TH>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#compareTo(org.apache.commons.math3.genetics.Chromosome)">compareTo</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#findSameChromosome(org.apache.commons.math3.genetics.Population)">findSameChromosome</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#getFitness()">getFitness</A>, <A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#searchForFitnessUpdate(org.apache.commons.math3.genetics.Population)">searchForFitnessUpdate</A></CODE></TD>
</TR>
</TABLE>
&nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
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<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><CODE><A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#clone()" title="class or interface in java.lang">clone</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
</TR>
</TABLE>
&nbsp;<A NAME="methods_inherited_from_class_org.apache.commons.math3.genetics.Fitness"><!-- --></A>
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
<TH ALIGN="left"><B>Methods inherited from interface org.apache.commons.math3.genetics.<A HREF="../../../../../org/apache/commons/math3/genetics/Fitness.html" title="interface in org.apache.commons.math3.genetics">Fitness</A></B></TH>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
<TD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/Fitness.html#fitness()">fitness</A></CODE></TD>
</TR>
</TABLE>
&nbsp;
<P>

<!-- ========= CONSTRUCTOR DETAIL ======== -->

<A NAME="constructor_detail"><!-- --></A>
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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<B>Constructor Detail</B></FONT></TH>
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<A NAME="BinaryChromosome(java.util.List)"><!-- --></A><H3>
BinaryChromosome</H3>
<PRE>
public <B>BinaryChromosome</B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;&nbsp;representation)
                 throws <A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></PRE>
<DL>
<DD>Constructor.
<P>
<DL>
<DT><B>Parameters:</B><DD><CODE>representation</CODE> - list of {0,1} values representing the chromosome
<DT><B>Throws:</B>
<DD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></CODE> - iff the <code>representation</code> can not represent a valid chromosome</DL>
</DL>
<HR>

<A NAME="BinaryChromosome(java.lang.Integer[])"><!-- --></A><H3>
BinaryChromosome</H3>
<PRE>
public <B>BinaryChromosome</B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>[]&nbsp;representation)
                 throws <A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></PRE>
<DL>
<DD>Constructor.
<P>
<DL>
<DT><B>Parameters:</B><DD><CODE>representation</CODE> - array of {0,1} values representing the chromosome
<DT><B>Throws:</B>
<DD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></CODE> - iff the <code>representation</code> can not represent a valid chromosome</DL>
</DL>

<!-- ============ METHOD DETAIL ========== -->

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<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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<B>Method Detail</B></FONT></TH>
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<A NAME="checkValidity(java.util.List)"><!-- --></A><H3>
checkValidity</H3>
<PRE>
protected void <B>checkValidity</B>(<A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;&nbsp;chromosomeRepresentation)
                      throws <A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></PRE>
<DL>
<DD>Asserts that <code>representation</code> can represent a valid chromosome.
<P>
<DD><DL>
<DT><B>Specified by:</B><DD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html#checkValidity(java.util.List)">checkValidity</A></CODE> in class <CODE><A HREF="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt;</CODE></DL>
</DD>
<DD><DL>
<DT><B>Parameters:</B><DD><CODE>chromosomeRepresentation</CODE> - representation of the chromosome
<DT><B>Throws:</B>
<DD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/InvalidRepresentationException.html" title="class in org.apache.commons.math3.genetics">InvalidRepresentationException</A></CODE> - iff the <code>representation</code> can not represent a valid chromosome</DL>
</DD>
</DL>
<HR>

<A NAME="randomBinaryRepresentation(int)"><!-- --></A><H3>
randomBinaryRepresentation</H3>
<PRE>
public static <A HREF="http://download.oracle.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="http://download.oracle.com/javase/6/docs/api/java/lang/Integer.html?is-external=true" title="class or interface in java.lang">Integer</A>&gt; <B>randomBinaryRepresentation</B>(int&nbsp;length)</PRE>
<DL>
<DD>Returns a representation of a random binary array of length <code>length</code>.
<P>
<DD><DL>
<DT><B>Parameters:</B><DD><CODE>length</CODE> - length of the array
<DT><B>Returns:</B><DD>a random binary array of length <code>length</code></DL>
</DD>
</DL>
<HR>

<A NAME="isSame(org.apache.commons.math3.genetics.Chromosome)"><!-- --></A><H3>
isSame</H3>
<PRE>
protected boolean <B>isSame</B>(<A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</A>&nbsp;another)</PRE>
<DL>
<DD><B>Description copied from class: <CODE><A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#isSame(org.apache.commons.math3.genetics.Chromosome)">Chromosome</A></CODE></B></DD>
<DD>Returns <code>true</code> iff <code>another</code> has the same representation and therefore the same fitness. By
 default, it returns false -- override it in your implementation if you need it.
<P>
<DD><DL>
<DT><B>Overrides:</B><DD><CODE><A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html#isSame(org.apache.commons.math3.genetics.Chromosome)">isSame</A></CODE> in class <CODE><A HREF="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</A></CODE></DL>
</DD>
<DD><DL>
<DT><B>Parameters:</B><DD><CODE>another</CODE> - chromosome to compare
<DT><B>Returns:</B><DD>true if <code>another</code> is equivalent to this chromosome</DL>
</DD>
</DL>
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